World Index of BioMolecular Visualization Resources

Free Molecular Visualization and Modeling Software
Caution: Some of free software listed here is Open Source in the strict sense, meaning that all derivatives are required to be free with open source code. If you plan to use the source code (not just the executable program), read the copyright restrictions carefully.

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Accelrys (formerly Molecular Simulations), Inc.   (www.accelrys.com )
WebLab (Accelrys) Viewer Lite
Discovery Studio Visualizer  
ALLOUCHE, Abdul-Rahman   (gabedit.sourceforge.net )
GABEDIT: A Graphical User Interface for Gamess-US, Gaussian, Molcas, Molpro, MPQC and Q-Chem computational chemistry packages.  
Audie, Joseph   (www.cmdbioscience.com )
CMD Bioscience    
Bell, Graeme   (mollycule.org )
MollyCule - Free, Easy Molecular Visualisation for schools and students.  
Bernstein, Herbert J.   (www.OpenRasMol.org )
OpenRasMol Home Page

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Betton, Christophe   (www.hyleos.net )
Hyleos ChemFileBrowser  
Bladon, Peter   (www.interprobe.co.uk )
Interprobe Chemical Services, Software and Databases  
Bohne, Andreas   (www.dkfz.de )
PDB2MGIF  
Bohne-Lang, Andreas   (www.dkfz-heidelberg.de )
AISMIG - An Interactive Server-side Molecule Image Generator  
Bottomley, Steven   (wabri.org.au )
jAMVLE: A New Integrated Molecular Visualization Learning Environment    
CambridgeSoft, Corp.   (scistore.chemstore.com )
ChemDraw Net Plugin

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Can, Tolga   (www.ceng.metu.edu.tr )
FPV: Fast Protein Visualization Using Java 3D  
ChemAxon, Ltd   (www.chemaxon.com )
Marvin Applets and JavaBeans
Calculator Plugins
JChem Base and JChem Cartridge
Screen
Fragmenter
Reactor

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Chen, Mengen   (noc.ibp.ac.cn )
NOC: a program for protein structure visualization, validation, model-building and analyzing  
Christopher, Jon   (quorum.tamu.edu )
Spock  
Colubri, Andres   (sosnick.uchicago.edu )
YAPView (Yet Another Protein Viewer)  
Craig, Paul   (bioeditor.sdsc.edu )
BioEditor  
Crivelli, Silvia   (proteinshop.lbl.gov )
ProteinShop    
Damborsky, Jiri   (www.chemi.muni.cz )
TRITON

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DeLano, Warren   (www.pymol.org )
PyMOL Molecular Graphics System     
Fackler, Nathanael   (howard.nebrwesleyan.edu )
Chemical and Safety Relational Database  
Fursov,Mikhail   (ugene.unipro.ru )
Unipro UGENE - Integrated Bioinformatics Tools    
Gale, Louis   (members.iinet.net.au )
Procreate  
Gans, Jason   (www.mbg.cornell.edu )
Qmol  
Gille, Christoph   (www.charite.de )
Structural Alignment Program for Proteins

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Glaser, Fabian   (consurf.tau.ac.il )
ConSurf Server for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Information  
Gopalan, Vivek   (surya.bic.nus.edu.sg )
XdomView: A Graphical Tool for Protein Domain and Exon Position Visualization  
Guex, Nicolas   (molvis.sdsc.edu )
Deep View  
Gunda, Tamas E.   (dragon.klte.hu )
Comparison of Five Chemical Drawing Programs    
Hassinen, Tommi   (bioinformatics.org )
Ghemical  
Hill, Jörg-Rüdiger   (viewmol.sourceforge.net )
Viewmol

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Ho, Bosco   (bosco.infogami.com )
Ramachandran Plot Explorer 1.0  
Hodis, Eran   (www.weizmann.ac.il )
eMovie: A storyboard-based tool for making molecular movies  
Honegger, Annemarie   (www.biochem.unizh.ch )
Excel Macros for PDB Files  
Huang, Conrad   (www.cgl.ucsf.edu )
Chimera    
Ilyin, Valentin   (mozart.bio.neu.edu )
Friend, an integrated multiple structure visualization and multiple sequence alignment application.     
Kochanczyk, Marek   (bioinformatics.org )
VeaR - the geometry-based structural highlighter for polypeptides in limited conformational subspace
Reveal - a viewer for automated active-site predictions for polypeptides

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Kokalj, Tone   (www.xcrysden.org )
XCrySDen - (X-Window) Crystalline Structures and Densities  
Koradi, Reto   (www.mol.biol.ethz.ch )
MolMol: MOLecule analysis and MOLecule display  
Kraulis, Per   (www.avatar.se )
MolScript  
Krieger, Elmar   (www.yasara.org )
YASARA View - Yet Another Scientific Artificial Reality Application  
Kuznik, Nikodem   (zeus.polsl.gliwice.pl )
Linux4Chemistry    
Laaksonen, Leif   (www.csc.fi )
gOpenMol  
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Maffett, Tim   (www.mdli.com )
Chime  
Martz, Eric   (www.umass.edu )
RasMol Home Page~ at UMass
Protein Explorer
Free Molecular Visualization Software
RasMol Home Pages
FirstGlance in Jmol

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McArdle, Patrick   (www.nuigalway.ie )
Moilin  
Merritt, Ethan A   (www.bmsc.washington.edu )
Raster3D  
Mishchenko, Mikhail   (www.mmish.ru )
Protein Data Bank Viewer  
Moeck, Peter   (nanocrystallography.research.pdx.edu )
Nanocrystallography Visualizations  
Moll, Andreas   (www.BALLView.org )
BALLView  
Moreland, John   (mice.sdsc.edu )
Molecule Interactive Collaborative Environment

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Morris, Garrett M.   (www.scripps.edu )
AutoDock: Automated docking of flexible ligands to macromolecules    
National Center for Biotechnology Information, National Library of Medicine   (www.ncbi.nlm.nih.gov )
Cn3D  
Nayal, Murad   (trantor.bioc.columbia.edu )
GRASS: Graphical Representation and Analysis of Structure Server  
Neshich, Goran   (trantor.bioc.columbia.edu )
STING
STING Millenium  
Nikitin, Alexey   (www.agilemolecule.com )
Software for molecular modeling  
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Oeffner, Robert   (development.oeffner.net )
Santorini - a Molecular Viewer
Patmos - a Molecular Screensaver  
OpenEye Scientific Software, Inc.   (www.eyesopen.com )
VIDA    
Pedretti, Alessandro   (users.unimi.it )
VEGA  
Perdigao, Luis   (code.google.com )
LPMolecularViewer  
Philippsen, Ansgar   (www.dino3d.org )
DINO - Visualizing Structural Biology

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Pillot, Paul   (www.ac-orleans-tours.fr )
MolUSc - Molecules pour un Usage Scolaire  
Porollo, Aleksey   (polyview.cchmc.org )
POLYVIEW  
POV, Team   (www.povray.org )
Persistence of Vision Raytracer  
Project, Jmol   (jmol.sourceforge.net )
Jmol  
Purvis, George   (home.att.net )
ChemApplet     
Richardson, David C.   (kinemage.biochem.duke.edu )
MAGE

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Richardson, David E   (www.chem.ufl.edu )
MolPOV 2  
Rodomontano, Software   (rodomontano.altervista.org )
SweetMollyGrace  
Rotkiewicz, Piotr   (www.pirx.com )
iMol - Molecular Viewer for Mac OS X    
Sanner, Michel   (www.scripps.edu )
Python for Structural Bioinformatics
MGLTools  
Saric, Marc   (www.marcsaric.de )
Free Molecular Modelling Programs

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SimBioSys, Inc.   (www.simbiosys.ca )
CheVi® - Chemical Visualizer  
Smith, Thomas   (www.danforthcenter.org )
MolViewX  
Stone, John   (www.ks.uiuc.edu )
VMD  
Suits, Frank   (www.alphaworks.ibm.com )
Prototype Protein Viewer    
Tarini, Marco   (qutemol.sourceforge.net )
QuteMol  
Thomsen, Rene   (www.molegro.com )
Molegro Molecular Viewer

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Tikhonov, Denis   (www.zmmsoft.com )
MVM - a Molecular Visualization Program and GUI of ZMM     
Valadon, Philippe   (www.geneinfinity.org )
RasTop  
Vassiliev, Vladislav   (sf.anu.edu.au )
Jamberoo (formerly JMolEditor)  
Villa, Jordi   (www1.imim.es )
Computational chemistry, molecular modelling and molecular visualization tools  
Vriend, Gert   (www.cmbi.kun.nl )
WHAT IF Web Interface    
Weber, Joe   (proteinshader.sourceforge.net )
ProteinShader  
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Xie, Charles   (workbench.concord.org )
Molecular Workbench     
Zhurko, Grigoriy   (www.chemcraftprog.com )
ChemCraft  
Zucic, Damir   (garlic.mefos.hr )
Garlic, Free Molecular Visualization Program, Version 1.2
Free Molecular Visualization Programs for Unix and/or Linux

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87 total first authors.
Visitor-Maintained Index programming by Trevor D. Kramer.