World Index of BioMolecular Visualization Resources

Free Molecular Visualization and Modeling Software
Caution: Some of free software listed here is Open Source in the strict sense, meaning that all derivatives are required to be free with open source code. If you plan to use the source code (not just the executable program), read the copyright restrictions carefully.

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Accelrys (formerly Molecular Simulations), Inc.   (www.accelrys.com )
WebLab (Accelrys) Viewer Lite
Discovery Studio Visualizer  
ALLOUCHE, Abdul-Rahman   (gabedit.sourceforge.net )
GABEDIT: A Graphical User Interface for Gamess-US, Gaussian, Molcas, Molpro, MPQC and Q-Chem computational chemistry packages.  
Audie, Joseph   (www.cmdbioscience.com )
CMD Bioscience    
Bernstein, Herbert J.   (www.OpenRasMol.org )
OpenRasMol Home Page  
Betton, Christophe   (www.hyleos.net )
Hyleos ChemFileBrowser

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Bladon, Peter   (www.interprobe.co.uk )
Interprobe Chemical Services, Software and Databases  
Bohne, Andreas   (www.dkfz.de )
PDB2MGIF  
Bohne-Lang, Andreas   (www.dkfz-heidelberg.de )
AISMIG - An Interactive Server-side Molecule Image Generator  
Bottomley, Steven   (wabri.org.au )
jAMVLE: A New Integrated Molecular Visualization Learning Environment    
CambridgeSoft, Corp.   (scistore.chemstore.com )
ChemDraw Net Plugin  
Can, Tolga   (www.ceng.metu.edu.tr )
FPV: Fast Protein Visualization Using Java 3D

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ChemAxon, Ltd   (www.chemaxon.com )
Marvin Applets and JavaBeans
Calculator Plugins
JChem Base and JChem Cartridge
Screen
Fragmenter
Reactor

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Chen, Mengen   (noc.ibp.ac.cn )
NOC: a program for protein structure visualization, validation, model-building and analyzing  
Christopher, Jon   (quorum.tamu.edu )
Spock  
Colubri, Andres   (sosnick.uchicago.edu )
YAPView (Yet Another Protein Viewer)  
Craig, Paul   (bioeditor.sdsc.edu )
BioEditor  
Crivelli, Silvia   (proteinshop.lbl.gov )
ProteinShop    
Damborsky, Jiri   (www.chemi.muni.cz )
TRITON

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DeLano, Warren   (www.pymol.org )
PyMOL Molecular Graphics System     
Fackler, Nathanael   (howard.nebrwesleyan.edu )
Chemical and Safety Relational Database    
Gans, Jason   (www.mbg.cornell.edu )
Qmol  
Gille, Christoph   (www.charite.de )
Structural Alignment Program for Proteins  
Glaser, Fabian   (consurf.tau.ac.il )
ConSurf Server for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Information  
Gopalan, Vivek   (surya.bic.nus.edu.sg )
XdomView: A Graphical Tool for Protein Domain and Exon Position Visualization

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Guex, Nicolas   (molvis.sdsc.edu )
Deep View  
Gunda, Tamas E.   (dragon.klte.hu )
Comparison of Five Chemical Drawing Programs    
Hassinen, Tommi   (bioinformatics.org )
Ghemical  
Hill, Jörg-Rüdiger   (viewmol.sourceforge.net )
Viewmol  
Ho, Bosco   (bosco.infogami.com )
Ramachandran Plot Explorer 1.0  
Hodis, Eran   (www.weizmann.ac.il )
eMovie: A storyboard-based tool for making molecular movies

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Honegger, Annemarie   (www.biochem.unizh.ch )
Excel Macros for PDB Files  
Huang, Conrad   (www.cgl.ucsf.edu )
Chimera    
Ilyin, Valentin   (mozart.bio.neu.edu )
Friend, an integrated multiple structure visualization and multiple sequence alignment application.     
Kochanczyk, Marek   (bioinformatics.org )
VeaR - the geometry-based structural highlighter for polypeptides in limited conformational subspace
Reveal - a viewer for automated active-site predictions for polypeptides  
Kokalj, Tone   (www.xcrysden.org )
XCrySDen - (X-Window) Crystalline Structures and Densities

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Koradi, Reto   (www.mol.biol.ethz.ch )
MolMol: MOLecule analysis and MOLecule display  
Kraulis, Per   (www.avatar.se )
MolScript  
Krieger, Elmar   (www.yasara.org )
YASARA View - Yet Another Scientific Artificial Reality Application  
Kuznik, Nikodem   (zeus.polsl.gliwice.pl )
Linux4Chemistry    
Laaksonen, Leif   (www.csc.fi )
gOpenMol    
Maffett, Tim   (www.mdli.com )
Chime

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Martz, Eric   (www.umass.edu )
RasMol Home Page~ at UMass
Protein Explorer
Free Molecular Visualization Software
RasMol Home Pages
FirstGlance in Jmol  
McArdle, Patrick   (www.nuigalway.ie )
Moilin

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Merritt, Ethan A   (www.bmsc.washington.edu )
Raster3D  
Moeck, Peter   (nanocrystallography.research.pdx.edu )
Nanocrystallography Visualizations  
Moll, Andreas   (www.BALLView.org )
BALLView  
Moreland, John   (mice.sdsc.edu )
Molecule Interactive Collaborative Environment  
Morris, Garrett M.   (www.scripps.edu )
AutoDock: Automated docking of flexible ligands to macromolecules    
National Center for Biotechnology Information, National Library of Medicine   (www.ncbi.nlm.nih.gov )
Cn3D

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Nayal, Murad   (trantor.bioc.columbia.edu )
GRASS: Graphical Representation and Analysis of Structure Server  
Neshich, Goran   (trantor.bioc.columbia.edu )
STING
STING Millenium  
Nikitin, Alexey   (www.agilemolecule.com )
Software for molecular modeling    
Oeffner, Robert   (development.oeffner.net )
Santorini - a Molecular Viewer
Patmos - a Molecular Screensaver

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OpenEye Scientific Software, Inc.   (www.eyesopen.com )
VIDA    
Pedretti, Alessandro   (users.unimi.it )
VEGA  
Philippsen, Ansgar   (www.dino3d.org )
DINO - Visualizing Structural Biology  
Pillot, Paul   (www.ac-orleans-tours.fr )
MolUSc - Molecules pour un Usage Scolaire  
Porollo, Aleksey   (polyview.cchmc.org )
POLYVIEW  
POV, Team   (www.povray.org )
Persistence of Vision Raytracer

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Project, Jmol   (jmol.sourceforge.net )
Jmol  
Purvis, George   (home.att.net )
ChemApplet     
Richardson, David C.   (kinemage.biochem.duke.edu )
MAGE  
Richardson, David E   (www.chem.ufl.edu )
MolPOV 2  
Rodomontano, Software   (rodomontano.altervista.org )
SweetMollyGrace  
Rotkiewicz, Piotr   (www.pirx.com )
iMol - Molecular Viewer for Mac OS X  
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Sanner, Michel   (www.scripps.edu )
Python for Structural Bioinformatics
MGLTools  
Saric, Marc   (www.marcsaric.de )
Free Molecular Modelling Programs  
SimBioSys, Inc.   (www.simbiosys.ca )
CheVi® - Chemical Visualizer  
Smith, Thomas   (www.danforthcenter.org )
MolViewX  
Stone, John   (www.ks.uiuc.edu )
VMD

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Suits, Frank   (www.alphaworks.ibm.com )
Prototype Protein Viewer    
Tarini, Marco   (qutemol.sourceforge.net )
QuteMol  
Thomsen, Rene   (www.molegro.com )
Molegro Molecular Viewer  
Tikhonov, Denis   (www.zmmsoft.com )
MVM - a Molecular Visualization Program and GUI of ZMM     
Valadon, Philippe   (www.geneinfinity.org )
RasTop  
Vassiliev, Vladislav   (sf.anu.edu.au )
JMolEditor

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Villa, Jordi   (www1.imim.es )
Computational chemistry, molecular modelling and molecular visualization tools  
Vriend, Gert   (www.cmbi.kun.nl )
WHAT IF Web Interface    
Weber, Joe   (proteinshader.sourceforge.net )
ProteinShader    
Xie, Charles   (workbench.concord.org )
Molecular Workbench     
Zhurko, Grigoriy   (www.chemcraftprog.com )
ChemCraft  
Zucic, Damir   (garlic.mefos.hr )
Garlic, Free Molecular Visualization Program, Version 1.2
Free Molecular Visualization Programs for Unix and/or Linux

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82 total first authors.
Visitor-Maintained Index programming by Trevor D. Kramer.