Flagellar Script Animation Scripts

Protein Explorer Animation Command Scripts for Flagellar Hook Rotation

The scripts below can be pasted into the animation script box in the NMR Models/Animation control panel of Protein Explorer displaying any of the flagellar hook rotation datasets. Pressing the [Animate] button will generate an animation rendered and colored like the corresponding saved animation. The script can then be customized if desired.

Simplified flagellar hook as rods.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 0.7
  #--End display script--

Simplified flagellar hook with spherical domains ("3 atoms").
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@ and (199,318)
spacefill 2.1
select model=@
backbone 1.
  #--End display script--

Simplified flagellar hook with spherical domains ("5 atoms").
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 1.5
select model=@ and (82,138,199,213)
spacefill 3.0
  #--End display script--

Simplified flagellar hook, one column highlighted, rods.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 0
select model=@ and (:g)
backbone 0.7
  #--End display script--

Simplified flagellar hook, one column highlighted, spheres.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 0
select model=@ and (:g)
backbone 0.7
select model=@ and (:g) and (199,318)
spacefill
  #--End display script--

One column, simplified, rotating through dot-spheres.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [xFFD8D8] # pink
select :g and (318,199) and (model=1,model=30)
dots
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@ and :g
backbone 0.7
select model=@ and :g and (199,318)
spacefill
  #--End display script--

Two rings, 11 molecules each, alpha carbons, rotating.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color [x00FFFF] # cyan
select :A and not hetero
color [x00FFFF] # cyan
select :L and not hetero
color [xD020FF] # purple
select :K and not hetero
color [x00FF00] # green
select :J and not hetero
color [x6060FF] # blue
select :I and not hetero
color [xFF80C0] # violet
select :H and not hetero
color [xa42028] # brown
select :G and not hetero
color [xFFD8D8] # pink
select :F and not hetero
color [xFFFF00] # yellow
select :E and not hetero
color [x00C000] # greendark
select :D and not hetero
color [xFFB000] # orange
select :B and not hetero
color [xB0B0FF] # bluelight
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 0
  #--End display script--

Two molecules, alpha carbons, rotating about the (invisible) hook axis.
See instructions at top of this document.

  #--Begin color scheme--
## show selected false
select all
color group
  #--End color scheme--

#$ Begin animation loop

  #--Begin display script--
  #Main display.
select model=@
backbone 0.01
select model=@ and (73,122,165,338,244,272)
spacefill 3.
  #--End display script--