MolSlides.ProteinExplorer.Org

Start or Spacebar for First Slide.
Copyright © 2006 by Eric Martz
(University of Massachusetts, Amherst MA USA) and
Fadel Samatey, Nanobiology Group, Osaka University, Japan.
Permission is hereby granted to use this document, or portions thereof, for non-profit educational purposes, provided this copyright statement remains intact within this document, or any portions or derivatives. Other uses require explicit permission from the author(s).

A 1024 x 768 pixel window in a browser with current java is required for correct display of the MolSlides below. Viewing Help, Downloading, & Troubleshooting.. (at bottom).
Spacebar/Enter for next slide, Backspace for previous. More keystrokes.. (at bottom)
1 Next Bottom 2 3 4 5 6 7 8 9 Made with MolSlides.ProteinExplorer.Org

2 Next Previous 1 3 4 5 6 7 8 9

3 Next Previous 1 2 4 5 6 7 8 9

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6 Next Previous 1 2 3 4 5 7 8 9

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9 LAST VIEW Previous Top 1 2 3 4 5 6 7 8

Instructions:

Touch to identify (wait for hover report).
Center by clicking on an atom.
Zoom: Shift and drag up/down.
Reload to restore original view.
Views of 1WLG showing all hook contacts:

Hook assembly.
Seven chains from hook (central chain has all hook contacts).
Spacefill showing contacts to 4 Å.

Putative hydrogen bonds to 3.5 Å. Putative hydrophobic interactions to 4.5 Å:
Chain coloring of contacts.
Element coloring of contacts.
Element coloring of contacts (both sides).
ConSurf coloring of contacts (both sides ball and stick).
ConSurf coloring of contacts (spacefill to ball and stick).

ConSurf colors from 158 Uniprot sequences (E < 10^-13), run 1151925203.
Made with MolSlides.ProteinExplorer.Org

Made with MolSlides.ProteinExplorer.Org

Viewing Help Downloading Help Troubleshooting

Viewing Help for MolSlides:

Here are the recommended browsers.
Maximize your window, then View, Full Screen (F11).
For a small (800 x 600 pixel) window, reduce the text size (View, Text Size). Then Reload the MolSlides.
Keystroke controls (not all work in every browser, but the links above each slide Next, Previous, 1, 2, ... 9 always work.):

Next Slide: Spacebar, Enter, Down Arrow, Right Arrow, PgDn.
Previous Slide: Backspace, Up Arrow, Left Arrow, PgUp.
Slide Number: 1-9.
First Slide: Home, Esc.
Last Slide: End.

Download These MolSlides

Please respect the copyright statement, if any is present in these MolSlides.
Make a new folder (directory) to receive your MolSlides.
Save the MolSlides themselves with your browser's File, Save As. (Some browsers may not save the MolSlides correctly. On Windows, these browsers are known to work well: Firefox, Netscape 7.2, Mozilla.)
Save each PDB file needed by this set of MolSlides (see list below under Troubleshooting). Click on the Jmol frank at the lower right corner of each molecular view, and choose the top item on the menu, a 4-character "PDB ID code". On the submenu, choose the bottom item, a code plus ".pdb". If a black browser window opens showing a wireframe rendering of the molecule (in MDL Chime), click on the MDL frank at the lower right corner and choose File, Save Molecule As.
You will also need the files JmolApplet.jar, JmolApplet0.jar, ... JmolApplet6.jar available from Jmol Download.
Double-click on the MolSlides HTML file to view it, or drag and drop it onto or into the browser you wish to use.
Troubleshooting MolSlides:
Can't see the molecule(s)?
This set of MolSlides uses the Jmol java applet, which requires Java on your computer. Some Windows computers need java (free) installed from java.com. (Also, the folder/directory supplying this MolSlides file must contain the JmolApplet#.jar files.)
If some (or all) slides have blank rectangles without any molecules, some (or all) of the necessary PDB files may be missing from the folder (directory) supplying this MolSlides file. This set of MolSlides needs the following PDB files:
hk10_str_ca.pdb, hk03cont2.pdb, 1wlg_consurf_cont_pipe.pdb