// Element colors are identical to those used by Jmol as listed here:
// http://jmol.sourceforge.net/jscolors/
// DRuMS element colors are taken from RasMol and Chime, except *

var colorSulfur = "ffff30";
var colorOxygen = "ff0d0d";
var colorNitrogen = "3050f8";
var colorCarbon = "909090";

var coloredElements =
"<font color='#" + colorCarbon + "'>C</font>\n" + // DRuMS=c8c8c8, text=919191
"<font color='#ffffff'>H</font>\n" + // DRuMS=ffffff, text=b7b7b7
"<font color='#"+ colorOxygen + "'>O</font>\n" + // DRuMS=ff0000*, text=f00000
"<font color='#" + colorNitrogen + "'>N</font>\n" + // DRuMS=8f8fff
"<font color='#" + colorSulfur + "'>S</font>\n" + // DRuMS=ffc832
"<font color='#ffa100'>Se</font>\n" + // DRuMS=
"<font color='#ff8000'>P</font>\n" + // DRuMS=ffa500
"<br>\n" + //
"<font color='#ab5cf2'>Na</font>\n" + // DRuMS=0000ff
"<font color='#8f40d4'>K</font>\n" +  // DRuMS=OTHER=ff1493
"<font color='#8aff00'>Mg</font>\n" + // DRuMS=228b22
"<font color='#3dff00'>Ca</font>\n" + // DRuMS=808090
"<font color='#e06633'>Fe</font>\n" + // DRuMS=ffa500 = P
"<font color='#9c7ac7'>Mn</font>\n" + // DRuMS=808090 = Ca
"<font color='#7d80b0'>Zn</font>\n" + // DRuMS=a52a2a
"<font color='#ffd98f'>Cd</font>\n";  // DRuMS=ff1493 = OTHER


var backgroundColor = "f4f4f4"; // also hard coded some places

var colorGrayLight = "a0a0a0"; // echo font

//====================================================================
// DRuMS Colors
//====================================================================

var colorHydrophobic     = "b0b0b0";
var colorHydrophobicText = "909090";

var colorPolar       = "e060e0";
var colorPolarText   = "d050d0";

var colorAcidic      = "ff0000";
var colorBasic       = "3366ff";
var colorBackbone    = "b000b0";

var colorHisBasic    = "a0a0ff";
var colorLightBasic  = "d8d8ff";
var colorLightAcidic = "ffd8d8";

var colorProtein     = "d0b060"; // DRuMS=cbbe8a
var colorDNA         = "ae00fe"; // =DRuMS
var colorRNA         = "f00080"; // DRuMS=fd0162

var colorLigand      = "50c030"; // DRuMS=6dfa36
var colorSolvent     = "3a79bc"; // =DRuMS

var colorAminoTerm   = "6060ff";
var colorCarboxyTerm = "ff0000";

var colorAlphaHelix  = "ff0080";
var colorBetaStrand  = "e08000";
var colorTurn        = "6080ff";

var colorSSBonds     = colorSulfur;

//====================================================================
// LIGHT CPK COLORS

// O, S, P are light enough already

var lightCarbon     = "c0c0c0"; // 909090
//var lightOxygen     = "a00000"; // ff0d0d
var lightNitrogen   = "80a0ff"; // 3050f8
//var lightSulfur     = "b0a000"; // ffff30
//var lightPhosphorus = "a05000"; // ff8000

// DARK CPK COLORS

var darkCarbon     = "808080"; // 909090
var darkOxygen     = "d00000"; // ff0d0d
var darkNitrogen   = "4060ff"; // 3050f8 lighter than CPK!
var darkSulfur     = "b0a000"; // ffff30
var darkPhosphorus = "e06000"; // ff8000
var darkWater      = "a000a0"; // magenta = ff00ff

//====================================================================
//====================================================================
//====================================================================